Variant report

Variant	rs2078040
Chromosome Location	chr4:110779516-110779517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10022841	0.88[CEU][hapmap]
rs10516559	0.83[CEU][hapmap]
rs11098049	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12498239	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500239	0.87[ASN][1000 genomes]
rs12504835	0.86[ASN][1000 genomes]
rs12508179	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12513108	0.94[CEU][hapmap]
rs12643147	0.86[ASN][1000 genomes]
rs12644142	0.94[CEU][hapmap];0.86[ASN][1000 genomes]
rs13112387	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13115969	1.00[CEU][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125596	0.84[EUR][1000 genomes]
rs13128244	0.83[CEU][hapmap]
rs13140289	0.94[CEU][hapmap];0.87[ASN][1000 genomes]
rs13141065	0.89[CEU][hapmap]
rs13150454	0.94[CEU][hapmap]
rs1860130	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2347130	1.00[CEU][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2347131	0.94[CEU][hapmap];0.88[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2347132	0.94[CEU][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2347133	0.94[CEU][hapmap];0.82[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34378309	0.86[ASN][1000 genomes]
rs34706258	0.90[ASN][1000 genomes]
rs35043368	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35426158	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3775961	0.89[CEU][hapmap]
rs4353905	0.94[CEU][hapmap];0.87[ASN][1000 genomes]
rs4422417	0.94[CEU][hapmap]
rs4610335	0.94[CEU][hapmap];0.87[ASN][1000 genomes]
rs4698749	0.94[CEU][hapmap]
rs4698750	0.90[ASN][1000 genomes]
rs4698751	0.85[EUR][1000 genomes]
rs4698795	0.83[CEU][hapmap]
rs4698799	0.85[EUR][1000 genomes]
rs55814498	0.82[EUR][1000 genomes]
rs6814655	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814743	0.94[CEU][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs6816185	1.00[CEU][hapmap];0.82[JPT][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6841737	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6858351	0.94[CEU][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs7657133	0.94[CEU][hapmap]
rs7678178	0.94[CEU][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7698794	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110773600-110780000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:110779400-110782000	Enhancers	Liver	Liver

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