Variant report

Variant	rs6814655
Chromosome Location	chr4:110786698-110786699
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110623136..110625842-chr4:110784972..110787630,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138794	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11098049	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12498239	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500239	0.87[ASN][1000 genomes]
rs12504835	0.86[ASN][1000 genomes]
rs12508179	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643147	0.86[ASN][1000 genomes]
rs12644142	0.86[ASN][1000 genomes]
rs13112387	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13115969	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125596	0.86[EUR][1000 genomes]
rs13140289	0.87[ASN][1000 genomes]
rs1860130	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2078040	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2347130	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2347131	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2347132	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2347133	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34378309	0.86[ASN][1000 genomes]
rs34706258	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35043368	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35426158	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4353905	0.87[ASN][1000 genomes]
rs4610335	0.87[ASN][1000 genomes]
rs4698750	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4698751	0.85[EUR][1000 genomes]
rs4698799	0.87[EUR][1000 genomes]
rs55814498	0.82[EUR][1000 genomes]
rs6814743	0.90[ASN][1000 genomes]
rs6816185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6841737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6858351	0.90[ASN][1000 genomes]
rs7678178	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7698794	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110780400-110795000	Weak transcription	Esophagus	oesophagus
2	chr4:110786000-110791000	Weak transcription	Primary T cells from cord blood	blood
3	chr4:110786200-110796600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:110786400-110790600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:110786600-110791200	Weak transcription	Lung	lung

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