Variant report
| Variant | rs6843193 |
|---|---|
| Chromosome Location | chr4:91665403-91665404 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1114878 | 0.81[CEU][hapmap];0.85[YRI][hapmap] |
| rs11727543 | 0.81[CHB][hapmap] |
| rs11930189 | 0.87[YRI][hapmap] |
| rs12510662 | 0.92[YRI][hapmap] |
| rs1399419 | 0.81[CEU][hapmap];0.92[YRI][hapmap] |
| rs1514733 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1606752 | 0.83[YRI][hapmap] |
| rs17017439 | 0.91[CEU][hapmap];0.86[CHB][hapmap] |
| rs17017488 | 0.93[YRI][hapmap] |
| rs17184632 | 0.96[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs1828884 | 0.86[YRI][hapmap] |
| rs2123957 | 0.81[CHB][hapmap];0.81[JPT][hapmap] |
| rs4571297 | 0.81[CHB][hapmap] |
| rs59614972 | 0.83[AFR][1000 genomes] |
| rs6532239 | 0.96[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs6835028 | 0.96[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs6843367 | 0.81[CHB][hapmap] |
| rs6850783 | 0.82[CEU][hapmap];0.93[YRI][hapmap] |
| rs7658990 | 0.96[YRI][hapmap] |
| rs7665447 | 0.93[YRI][hapmap] |
| rs7666611 | 0.81[CHB][hapmap] |
| rs7698270 | 0.81[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931074 | chr4:90970476-91753697 | Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv534470 | chr4:91342219-91842807 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv428766 | chr4:91618397-91768647 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:91663800-91668200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
