Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11939649	0.85[ASN][1000 genomes]
rs1377916	0.82[LWK][hapmap]
rs1399417	0.86[LWK][hapmap];0.82[MKK][hapmap]
rs1399418	0.86[LWK][hapmap];0.83[MKK][hapmap]
rs1399419	0.85[YRI][hapmap]
rs1514733	0.93[LWK][hapmap];0.92[YRI][hapmap]
rs1606752	0.81[YRI][hapmap]
rs17017488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17184632	0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs17245295	0.82[LWK][hapmap]
rs3733451	0.86[LWK][hapmap]
rs59614972	0.89[AFR][1000 genomes]
rs6532239	0.82[ASW][hapmap];0.95[LWK][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs6532241	0.82[LWK][hapmap]
rs6835028	0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs6843193	0.92[YRI][hapmap]
rs6850783	0.85[YRI][hapmap]
rs7658990	0.96[YRI][hapmap]
rs7665447	0.92[YRI][hapmap]
rs976483	0.82[LWK][hapmap];0.80[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv879547	chr4:91546380-91661217	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879548	chr4:91558486-91661217	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv4420	chr4:91616307-91661796	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12510662	NUDT9	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91649800-91654000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:91649800-91654600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:91650000-91654200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:91650000-91660000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:91650400-91654400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:91650400-91654400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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