Variant report

Variant	rs3733451
Chromosome Location	chr4:91614361-91614362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11722100	0.80[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.83[ASN][1000 genomes]
rs11731445	0.87[JPT][hapmap];0.83[YRI][hapmap]
rs12503263	0.92[CEU][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12510662	0.86[LWK][hapmap]
rs13150060	0.85[JPT][hapmap]
rs1355991	0.81[JPT][hapmap]
rs1377916	0.87[JPT][hapmap];0.88[YRI][hapmap]
rs1399417	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1399418	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs1514733	0.84[LWK][hapmap]
rs1514742	0.87[JPT][hapmap];0.82[LWK][hapmap];0.80[MEX][hapmap]
rs1606752	0.92[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17017439	0.81[YRI][hapmap]
rs17184632	0.84[CEU][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap];0.83[ASN][1000 genomes]
rs17186550	0.81[ASN][1000 genomes]
rs17245295	0.87[JPT][hapmap];0.88[YRI][hapmap]
rs17245443	0.87[JPT][hapmap]
rs1869539	0.81[YRI][hapmap]
rs36042723	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs3733452	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59614972	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62313023	0.83[ASN][1000 genomes]
rs6532239	0.85[CEU][hapmap];0.80[CHB][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap];0.93[JPT][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap];0.81[YRI][hapmap];0.83[ASN][1000 genomes]
rs6532241	0.87[JPT][hapmap];0.88[YRI][hapmap]
rs6532243	0.81[ASN][1000 genomes]
rs6811504	0.84[ASN][1000 genomes]
rs6835028	0.92[CEU][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7658990	0.85[CEU][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap]
rs7664025	0.87[JPT][hapmap]
rs7665447	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs7670480	0.92[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7683460	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs7687983	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7688114	0.85[CEU][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap]
rs976483	0.87[JPT][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv879547	chr4:91546380-91661217	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879548	chr4:91558486-91661217	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879551	chr4:91568530-91615595	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv461581	chr4:91596734-91647046	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv594833	chr4:91596734-91647046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91612200-91615600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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