Variant report

Variant	rs1869539
Chromosome Location	chr4:91709484-91709485
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11097264	1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11722100	0.81[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11726340	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11730172	0.90[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11730314	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11731445	0.85[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1377916	0.81[CEU][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1454340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1454341	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1598146	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1598147	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1606752	0.83[YRI][hapmap]
rs17185779	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17186550	0.91[AFR][1000 genomes]
rs17245295	0.85[CEU][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs17245443	0.85[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17245485	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17245961	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17246122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168075	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2271592	0.83[AFR][1000 genomes]
rs2870264	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3733451	0.81[YRI][hapmap]
rs4410494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4423844	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4518209	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4597790	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs55705817	0.84[AFR][1000 genomes]
rs62313023	0.82[AFR][1000 genomes]
rs62313024	0.83[AFR][1000 genomes]
rs6532241	0.85[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs6532242	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6532243	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6811504	0.89[AFR][1000 genomes]
rs7340817	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7661466	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7664025	0.86[YRI][hapmap]
rs7670480	0.83[YRI][hapmap]
rs7683460	0.84[CEU][hapmap];0.95[YRI][hapmap]
rs7685883	0.88[YRI][hapmap]
rs7688114	0.92[YRI][hapmap]
rs897087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs897088	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs897089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs976483	0.85[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879552	chr4:91691313-91729462	Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv879554	chr4:91692287-91731886	Enhancers Weak transcription Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91700400-91713000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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