Variant report
| Variant | rs7685883 |
|---|---|
| Chromosome Location | chr4:91695730-91695731 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10516879 | 0.94[CEU][hapmap] |
| rs1114878 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11722100 | 0.86[YRI][hapmap] |
| rs11731445 | 0.86[YRI][hapmap] |
| rs11733475 | 0.83[CEU][hapmap] |
| rs11930189 | 0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap] |
| rs1377916 | 0.88[YRI][hapmap] |
| rs1399419 | 0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17187375 | 0.83[CEU][hapmap] |
| rs17187951 | 0.83[CEU][hapmap] |
| rs17245295 | 0.88[YRI][hapmap] |
| rs17247348 | 0.83[CEU][hapmap] |
| rs1828884 | 0.83[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap] |
| rs1869539 | 0.88[YRI][hapmap] |
| rs2123959 | 0.83[CEU][hapmap] |
| rs57523538 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs58042044 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6532241 | 0.88[YRI][hapmap] |
| rs6850783 | 0.87[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs72875647 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7340943 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7340945 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7667003 | 0.83[CEU][hapmap] |
| rs7678915 | 0.94[CEU][hapmap] |
| rs7688114 | 0.86[YRI][hapmap] |
| rs976483 | 0.88[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931074 | chr4:90970476-91753697 | Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv534470 | chr4:91342219-91842807 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv428766 | chr4:91618397-91768647 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv879552 | chr4:91691313-91729462 | Enhancers Active TSS Weak transcription ZNF genes & repeats | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv879553 | chr4:91691313-91868576 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv879554 | chr4:91692287-91731886 | Enhancers Weak transcription Active TSS ZNF genes & repeats | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:91692200-91696600 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
