Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10009811	0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs10010346	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs10516879	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs11733348	0.82[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11733475	0.88[CEU][hapmap]
rs11935538	0.84[ASN][1000 genomes]
rs17017673	0.80[EUR][1000 genomes]
rs17187375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17247348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17248761	1.00[JPT][hapmap]
rs1869537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123958	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2123959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[TSI][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28750298	0.81[ASN][1000 genomes]
rs28857579	0.84[ASN][1000 genomes]
rs60366873	0.91[ASN][1000 genomes]
rs62311073	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73834570	0.84[ASN][1000 genomes]
rs7660801	0.81[CEU][hapmap]
rs7667003	0.88[CEU][hapmap]
rs7670293	0.82[CEU][hapmap]
rs7678915	0.89[CEU][hapmap]
rs7685883	0.83[CEU][hapmap]
rs7696319	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs9991987	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879553	chr4:91691313-91868576	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17187951	NSUN6	trans	cerebellum	SCAN
rs17187951	ATOH1	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91735400-91745800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:91735600-91754200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:91736400-91753600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:91738600-91744000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:91738600-91744200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:91738600-91745200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:91738600-91745200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:91740000-91744600	Weak transcription	Pancreas	Pancrea

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