Variant report
| Variant | rs17187375 |
|---|---|
| Chromosome Location | chr4:91732390-91732391 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10009811 | 0.90[JPT][hapmap] |
| rs10010346 | 1.00[JPT][hapmap] |
| rs10516879 | 0.89[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs11733348 | 1.00[JPT][hapmap] |
| rs11733475 | 0.88[CEU][hapmap] |
| rs17017673 | 0.80[EUR][1000 genomes] |
| rs17187951 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17247348 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17248761 | 1.00[JPT][hapmap] |
| rs1869537 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2123958 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2123959 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs28750298 | 0.80[ASN][1000 genomes] |
| rs60366873 | 0.85[ASN][1000 genomes] |
| rs62311073 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7660801 | 0.81[CEU][hapmap] |
| rs7667003 | 0.88[CEU][hapmap] |
| rs7670293 | 0.82[CEU][hapmap] |
| rs7678915 | 0.89[CEU][hapmap] |
| rs7685883 | 0.83[CEU][hapmap] |
| rs7696319 | 0.89[CHB][hapmap];0.88[JPT][hapmap] |
| rs9991987 | 0.83[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931074 | chr4:90970476-91753697 | Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv534470 | chr4:91342219-91842807 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv428766 | chr4:91618397-91768647 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv879553 | chr4:91691313-91868576 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
