Variant report
Variant | rs1399417 |
---|---|
Chromosome Location | chr4:91615595-91615596 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11722100 | 0.93[JPT][hapmap];0.83[ASN][1000 genomes] |
rs11731445 | 0.86[JPT][hapmap] |
rs12503263 | 0.92[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12510662 | 0.86[LWK][hapmap];0.82[MKK][hapmap] |
rs13150060 | 0.85[JPT][hapmap] |
rs1377916 | 0.86[JPT][hapmap];0.84[YRI][hapmap] |
rs1399418 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap] |
rs1514733 | 0.84[LWK][hapmap] |
rs1514742 | 0.86[JPT][hapmap];0.82[LWK][hapmap];0.83[MEX][hapmap] |
rs1606752 | 0.92[CEU][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs17184632 | 0.84[CEU][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes] |
rs17186550 | 0.81[ASN][1000 genomes] |
rs17245295 | 0.86[JPT][hapmap];0.84[YRI][hapmap] |
rs17245443 | 0.86[JPT][hapmap] |
rs36042723 | 0.82[AFR][1000 genomes];0.82[ASN][1000 genomes] |
rs3733451 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3733452 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs59614972 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs62313023 | 0.83[ASN][1000 genomes] |
rs6532239 | 0.85[CEU][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.93[JPT][hapmap];0.86[LWK][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];0.83[ASN][1000 genomes] |
rs6532241 | 0.81[GIH][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap] |
rs6532243 | 0.81[ASN][1000 genomes] |
rs6811504 | 0.84[ASN][1000 genomes] |
rs6835028 | 0.92[CEU][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7658990 | 0.85[CEU][hapmap];0.86[JPT][hapmap] |
rs7664025 | 0.86[JPT][hapmap] |
rs7665447 | 0.85[CEU][hapmap];0.86[JPT][hapmap] |
rs7670480 | 0.92[CEU][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7683460 | 0.81[CHB][hapmap];0.83[JPT][hapmap] |
rs7687983 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7688114 | 0.85[CEU][hapmap];0.86[JPT][hapmap] |
rs976483 | 0.81[GIH][hapmap];0.86[JPT][hapmap];0.84[YRI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv931074 | chr4:90970476-91753697 | Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
2 | nsv534470 | chr4:91342219-91842807 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv879547 | chr4:91546380-91661217 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
4 | nsv879548 | chr4:91558486-91661217 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv879551 | chr4:91568530-91615595 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | nsv461581 | chr4:91596734-91647046 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv594833 | chr4:91596734-91647046 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:91612200-91615600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |