Variant report

Variant	rs6843645
Chromosome Location	chr4:151271783-151271784
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:151269841..151272760-chr4:151278468..151280411,2	K562	blood:
2	chr4:151264691..151267587-chr4:151269891..151271961,2	K562	blood:
3	chr4:151270468..151272964-chr4:151455945..151457870,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10004618	0.93[AMR][1000 genomes]
rs10007367	0.81[AMR][1000 genomes]
rs10010611	0.81[AMR][1000 genomes]
rs10010954	0.81[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs10222778	0.81[AMR][1000 genomes]
rs10471054	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10520063	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12331959	0.81[AMR][1000 genomes]
rs13136928	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1459743	0.81[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs1507189	0.82[EUR][1000 genomes]
rs1546417	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17632215	0.90[MEX][hapmap];0.83[AMR][1000 genomes]
rs17688556	0.81[AMR][1000 genomes]
rs17688594	0.81[AMR][1000 genomes]
rs2055688	0.88[AMR][1000 genomes]
rs4458434	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4696085	0.81[AMR][1000 genomes]
rs56145629	0.81[AMR][1000 genomes]
rs59545554	0.81[AMR][1000 genomes]
rs6535730	0.89[GIH][hapmap]
rs6535731	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535732	0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6535733	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6844752	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7657948	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7659675	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7683815	0.84[EUR][1000 genomes]
rs7687678	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7691809	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7692491	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1032689	chr4:150971003-151316856	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv537300	chr4:150971003-151316856	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv880256	chr4:151126725-151751369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv880259	chr4:151210761-151367745	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv880260	chr4:151214038-151331191	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv817540	chr4:151228965-151858609	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv830112	chr4:151243801-151431771	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:151205000-151272200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:151224200-151274800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:151226800-151272400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:151236400-151272600	Weak transcription	Thymus	Thymus
5	chr4:151242800-151273800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr4:151243000-151277000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:151243000-151277400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:151243000-151312000	Weak transcription	Primary B cells from cord blood	blood
9	chr4:151244200-151300600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:151247200-151277000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:151247800-151285200	Weak transcription	GM12878-XiMat	blood
12	chr4:151259400-151277000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:151260000-151280000	Weak transcription	Fetal Stomach	stomach
14	chr4:151262400-151311200	Weak transcription	Primary T cells from cord blood	blood
15	chr4:151264400-151275400	Weak transcription	Gastric	stomach
16	chr4:151264400-151280400	Weak transcription	Small Intestine	intestine
17	chr4:151264600-151272000	Weak transcription	Adipose Nuclei	Adipose
18	chr4:151264800-151277000	Weak transcription	Liver	Liver
19	chr4:151265000-151272000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:151265000-151277000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr4:151265000-151277000	Weak transcription	Fetal Intestine Large	intestine
22	chr4:151265000-151278200	Weak transcription	Colon Smooth Muscle	Colon
23	chr4:151265200-151273000	Weak transcription	K562	blood
24	chr4:151265200-151278200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr4:151266600-151272800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr4:151268000-151272000	Strong transcription	Primary B cells from peripheral blood	blood
27	chr4:151268000-151272000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:151268800-151293800	Weak transcription	Fetal Intestine Small	intestine
29	chr4:151269600-151271800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr4:151269800-151271800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:151269800-151300600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:151270400-151272000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr4:151270400-151285200	Weak transcription	Aorta	Aorta
34	chr4:151270800-151272400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr4:151270800-151272800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr4:151271200-151274600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr4:151271200-151278600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr4:151271400-151271800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr4:151271600-151272000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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