Variant report

Variant	rs6845165
Chromosome Location	chr4:47209980-47209981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10001018	0.85[YRI][hapmap]
rs10016388	0.85[YRI][hapmap]
rs10938473	1.00[YRI][hapmap]
rs10938474	0.82[YRI][hapmap]
rs1442092	0.82[YRI][hapmap]
rs1542097	0.85[YRI][hapmap]
rs2119780	0.82[YRI][hapmap]
rs2165612	0.82[YRI][hapmap]
rs2351298	1.00[YRI][hapmap]
rs6447535	0.85[YRI][hapmap]
rs6819839	0.85[YRI][hapmap]
rs6827925	0.85[YRI][hapmap]
rs7676425	0.82[YRI][hapmap]
rs994447	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829922	chr4:47093785-47261181	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879003	chr4:47102993-47215939	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1009766	chr4:47155845-47277391	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv1013512	chr4:47178547-47213133	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv537079	chr4:47178547-47213133	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6845165	HBD	trans	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47205200-47211600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:47209200-47210000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:47209200-47210200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:47209200-47210200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:47209200-47210200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:47209200-47210200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:47209200-47210400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:47209200-47215600	Weak transcription	Fetal Heart	heart
9	chr4:47209400-47210200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr4:47209600-47210000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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