Variant report
| Variant | rs6845307 |
|---|---|
| Chromosome Location | chr4:26535661-26535662 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs12651350 | 1.00[EUR][1000 genomes] |
| rs36224744 | 1.00[EUR][1000 genomes] |
| rs36224745 | 1.00[EUR][1000 genomes] |
| rs4349588 | 1.00[TSI][hapmap] |
| rs4692548 | 1.00[EUR][1000 genomes] |
| rs56656455 | 1.00[EUR][1000 genomes] |
| rs56834351 | 1.00[EUR][1000 genomes] |
| rs57269196 | 1.00[EUR][1000 genomes] |
| rs58297498 | 1.00[EUR][1000 genomes] |
| rs58551878 | 1.00[EUR][1000 genomes] |
| rs58990586 | 1.00[EUR][1000 genomes] |
| rs59082948 | 1.00[EUR][1000 genomes] |
| rs59902050 | 1.00[EUR][1000 genomes] |
| rs60016776 | 1.00[EUR][1000 genomes] |
| rs60212470 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60373412 | 1.00[EUR][1000 genomes] |
| rs60930192 | 1.00[EUR][1000 genomes] |
| rs61179790 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61239973 | 1.00[EUR][1000 genomes] |
| rs61299741 | 1.00[EUR][1000 genomes] |
| rs61557900 | 1.00[EUR][1000 genomes] |
| rs61681337 | 1.00[EUR][1000 genomes] |
| rs6825731 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6838102 | 1.00[EUR][1000 genomes] |
| rs6839766 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7659656 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7680701 | 1.00[AMR][1000 genomes] |
| rs7683070 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7689334 | 1.00[EUR][1000 genomes] |
| rs9291485 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762417 | chr4:26491768-26576800 | Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:26532200-26536600 | Weak transcription | HSMMtube | muscle |
| 2 | chr4:26535600-26535800 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
