Variant report

Variant	rs6847004
Chromosome Location	chr4:173920865-173920866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:173916638..173918298-chr4:173918525..173921197,2	K562	blood:
2	chr4:173918685..173922576-chr4:174253397..174256418,3	K562	blood:
3	chr4:173920406..173921078-chr8:83818965..83819863,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164104	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10003998	0.81[EUR][1000 genomes]
rs10030847	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173904200-173935200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:173920000-173922800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr4:173920400-173923000	Weak transcription	Aorta	Aorta
4	chr4:173920400-173923200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:173920600-173921600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:173920600-173922000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:173920600-173922200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:173920600-173922200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:173920600-173922200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:173920600-173922800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:173920600-173923000	Weak transcription	NHLF	lung
12	chr4:173920600-173923200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:173920600-173923600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:173920600-173927200	Weak transcription	Esophagus	oesophagus
15	chr4:173920600-173927200	Weak transcription	A549	lung
16	chr4:173920600-173942400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:173920800-173921200	Enhancers	K562	blood
18	chr4:173920800-173921800	Weak transcription	Hela-S3	cervix
19	chr4:173920800-173922000	Weak transcription	HMEC	breast
20	chr4:173920800-173922000	Weak transcription	NH-A	brain
21	chr4:173920800-173922000	Weak transcription	NHEK	skin
22	chr4:173920800-173922200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:173920800-173922200	Weak transcription	NHDF-Ad	bronchial
24	chr4:173920800-173922400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:173920800-173922400	Weak transcription	HSMM	muscle
26	chr4:173920800-173922600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:173920800-173922600	Weak transcription	Osteobl	bone

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