Variant report

Variant	rs10003998
Chromosome Location	chr4:173926516-173926517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10017507	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10030847	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12644630	0.83[EUR][1000 genomes]
rs17254611	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17254681	0.84[EUR][1000 genomes]
rs28380538	0.83[EUR][1000 genomes]
rs28582871	0.84[EUR][1000 genomes]
rs28705797	0.83[EUR][1000 genomes]
rs28800549	0.82[EUR][1000 genomes]
rs4547777	0.84[EUR][1000 genomes]
rs55936404	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62341884	0.84[EUR][1000 genomes]
rs62341886	0.84[EUR][1000 genomes]
rs62341887	0.82[AMR][1000 genomes]
rs62341919	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62341920	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6847004	0.81[EUR][1000 genomes]
rs7682619	0.84[EUR][1000 genomes]
rs9997573	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173904200-173935200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:173920600-173927200	Weak transcription	Esophagus	oesophagus
3	chr4:173920600-173927200	Weak transcription	A549	lung
4	chr4:173920600-173942400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:173923400-173934800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:173923600-173927000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:173925400-173934800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr4:173926000-173926800	Enhancers	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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