Variant report

Variant	rs62341884
Chromosome Location	chr4:173901369-173901370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10003998	0.84[EUR][1000 genomes]
rs10014915	0.84[EUR][1000 genomes]
rs12641678	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12644630	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17254079	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17254611	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17254681	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2610188	0.83[ASN][1000 genomes]
rs2610191	0.83[ASN][1000 genomes]
rs2653844	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28380538	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28483480	0.88[EUR][1000 genomes]
rs28485277	0.85[EUR][1000 genomes]
rs28524136	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28582871	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28671519	0.87[EUR][1000 genomes]
rs28705797	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28800549	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28890012	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4547777	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55936404	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56110146	0.83[ASN][1000 genomes]
rs62341886	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62341887	1.00[ASN][1000 genomes]
rs62341919	0.82[EUR][1000 genomes]
rs62341920	0.80[EUR][1000 genomes]
rs6852770	0.83[ASN][1000 genomes]
rs7663630	0.88[EUR][1000 genomes]
rs7682619	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7693329	0.88[EUR][1000 genomes]
rs9997573	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173897200-173901800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:173898000-173904200	Enhancers	Hela-S3	cervix
3	chr4:173898800-173902800	Weak transcription	HMEC	breast
4	chr4:173899400-173901800	Enhancers	Stomach Mucosa	stomach
5	chr4:173899600-173901600	Enhancers	Duodenum Mucosa	Duodenum
6	chr4:173900000-173901800	Enhancers	A549	lung
7	chr4:173900400-173903400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:173901000-173903000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:173901200-173901400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:173901200-173903600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:173901200-173904000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links