Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10017507	0.89[EUR][1000 genomes]
rs10030847	0.87[EUR][1000 genomes]
rs12641678	0.80[ASN][1000 genomes]
rs12644630	0.85[ASN][1000 genomes]
rs17254079	0.83[ASN][1000 genomes]
rs17254611	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17254681	0.81[EUR][1000 genomes]
rs2610188	0.80[ASN][1000 genomes]
rs2610191	0.80[ASN][1000 genomes]
rs28380538	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28582871	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28705797	0.97[ASN][1000 genomes]
rs28800549	0.97[ASN][1000 genomes]
rs28890012	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4547777	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4574383	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56110146	0.80[ASN][1000 genomes]
rs62341884	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62341886	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62341887	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6852770	0.80[ASN][1000 genomes]
rs7682619	0.81[EUR][1000 genomes]
rs9997573	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173903800-173918000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:173904200-173935200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:173907800-173917000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:173910200-173916200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:173910400-173920200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:173912000-173919600	Weak transcription	HUVEC	blood vessel
7	chr4:173912200-173915400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:173912600-173914800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr4:173912800-173915000	Enhancers	Fetal Intestine Small	intestine
10	chr4:173913200-173915000	Enhancers	A549	lung
11	chr4:173913200-173915400	Enhancers	Fetal Intestine Large	intestine
12	chr4:173913200-173917400	Enhancers	Hela-S3	cervix
13	chr4:173913800-173914200	Flanking Active TSS	K562	blood
14	chr4:173913800-173914600	Enhancers	Duodenum Mucosa	Duodenum
15	chr4:173913800-173914600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr4:173914000-173914400	Enhancers	Stomach Mucosa	stomach

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