Variant report

Variant	rs28582871
Chromosome Location	chr4:173904435-173904436
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10003998	0.84[EUR][1000 genomes]
rs10014915	0.84[EUR][1000 genomes]
rs12641678	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12644630	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17254079	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17254611	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17254681	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2610188	0.83[ASN][1000 genomes]
rs2610191	0.83[ASN][1000 genomes]
rs2653844	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28380538	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28483480	0.88[EUR][1000 genomes]
rs28485277	0.85[EUR][1000 genomes]
rs28524136	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28671519	0.87[EUR][1000 genomes]
rs28705797	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28800549	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28890012	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4547777	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55936404	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56110146	0.83[ASN][1000 genomes]
rs62341884	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62341886	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62341887	1.00[ASN][1000 genomes]
rs62341919	0.82[EUR][1000 genomes]
rs62341920	0.80[EUR][1000 genomes]
rs6852770	0.83[ASN][1000 genomes]
rs7663630	0.88[EUR][1000 genomes]
rs7682619	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7693329	0.88[EUR][1000 genomes]
rs9997573	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173902800-173904600	Enhancers	HMEC	breast
2	chr4:173903200-173904600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:173903200-173904600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:173903400-173904600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:173903400-173905600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:173903800-173905000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:173903800-173905000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:173903800-173905200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:173903800-173918000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:173904200-173904600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:173904200-173906000	Weak transcription	HUVEC	blood vessel
12	chr4:173904200-173906200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:173904200-173906600	Weak transcription	Hela-S3	cervix
14	chr4:173904200-173935200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:173904400-173904600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:173904400-173904600	Enhancers	Esophagus	oesophagus
17	chr4:173904400-173906200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:173904400-173906200	Weak transcription	NHEK	skin

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