Variant report

Variant	rs28485277
Chromosome Location	chr4:173895205-173895206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12644630	0.86[EUR][1000 genomes]
rs17254611	0.85[EUR][1000 genomes]
rs17254681	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2610215	0.87[ASN][1000 genomes]
rs28380538	0.86[EUR][1000 genomes]
rs28483480	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28582871	0.85[EUR][1000 genomes]
rs28671519	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28705797	0.84[EUR][1000 genomes]
rs28800549	0.83[EUR][1000 genomes]
rs4547777	0.85[EUR][1000 genomes]
rs4574383	0.82[ASN][1000 genomes]
rs55936404	0.83[EUR][1000 genomes]
rs62341884	0.85[EUR][1000 genomes]
rs62341886	0.85[EUR][1000 genomes]
rs7663630	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682619	0.85[EUR][1000 genomes]
rs7693329	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997573	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173895200-173895800	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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