Variant report

Variant	rs7663630
Chromosome Location	chr4:173903197-173903198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12644630	0.87[EUR][1000 genomes]
rs17254611	0.88[EUR][1000 genomes]
rs17254681	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2610215	0.87[ASN][1000 genomes]
rs28380538	0.87[EUR][1000 genomes]
rs28483480	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485277	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28582871	0.88[EUR][1000 genomes]
rs28671519	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28705797	0.87[EUR][1000 genomes]
rs28800549	0.86[EUR][1000 genomes]
rs4547777	0.88[EUR][1000 genomes]
rs4574383	0.82[ASN][1000 genomes]
rs55936404	0.86[EUR][1000 genomes]
rs62341884	0.88[EUR][1000 genomes]
rs62341886	0.88[EUR][1000 genomes]
rs7682619	0.88[EUR][1000 genomes]
rs7693329	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997573	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173898000-173904200	Enhancers	Hela-S3	cervix
2	chr4:173900400-173903400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:173901200-173903600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:173901200-173904000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:173901800-173903200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:173901800-173903200	Weak transcription	Stomach Mucosa	stomach
7	chr4:173901800-173903200	Weak transcription	A549	lung
8	chr4:173902000-173903400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:173902400-173903400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:173902600-173904000	Weak transcription	Esophagus	oesophagus
11	chr4:173902600-173904400	Enhancers	NHEK	skin
12	chr4:173902800-173904600	Enhancers	HMEC	breast
13	chr4:173903000-173903400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:173903000-173904200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:173903000-173904200	Enhancers	HUVEC	blood vessel

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links