Variant report

Variant	rs28483480
Chromosome Location	chr4:173904675-173904676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12644630	0.87[EUR][1000 genomes]
rs17254611	0.88[EUR][1000 genomes]
rs17254681	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2610215	0.87[ASN][1000 genomes]
rs28380538	0.87[EUR][1000 genomes]
rs28485277	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28582871	0.88[EUR][1000 genomes]
rs28671519	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28705797	0.87[EUR][1000 genomes]
rs28800549	0.86[EUR][1000 genomes]
rs4547777	0.88[EUR][1000 genomes]
rs4574383	0.82[ASN][1000 genomes]
rs55936404	0.86[EUR][1000 genomes]
rs62341884	0.88[EUR][1000 genomes]
rs62341886	0.88[EUR][1000 genomes]
rs7663630	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682619	0.88[EUR][1000 genomes]
rs7693329	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997573	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173903400-173905600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:173903800-173905000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:173903800-173905000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:173903800-173905200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:173903800-173918000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:173904200-173906000	Weak transcription	HUVEC	blood vessel
7	chr4:173904200-173906200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:173904200-173906600	Weak transcription	Hela-S3	cervix
9	chr4:173904200-173935200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:173904400-173906200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:173904400-173906200	Weak transcription	NHEK	skin
12	chr4:173904600-173905200	Weak transcription	HMEC	breast
13	chr4:173904600-173906200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:173904600-173906600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:173904600-173909600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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