Variant report

Variant	rs4574383
Chromosome Location	chr4:173916231-173916232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10017507	0.89[CEU][hapmap]
rs28483480	0.82[ASN][1000 genomes]
rs28485277	0.82[ASN][1000 genomes]
rs28524136	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28671519	0.82[ASN][1000 genomes]
rs28890012	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62341887	0.81[EUR][1000 genomes]
rs7663630	0.82[ASN][1000 genomes]
rs7693329	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173903800-173918000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:173904200-173935200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:173907800-173917000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:173910400-173920200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:173912000-173919600	Weak transcription	HUVEC	blood vessel
6	chr4:173913200-173917400	Enhancers	Hela-S3	cervix
7	chr4:173914200-173916600	Enhancers	K562	blood
8	chr4:173914400-173919800	Weak transcription	Stomach Mucosa	stomach
9	chr4:173914800-173918200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:173914800-173919000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:173914800-173920200	Weak transcription	Esophagus	oesophagus
12	chr4:173915000-173919800	Weak transcription	Fetal Intestine Small	intestine
13	chr4:173915400-173919600	Weak transcription	Fetal Intestine Large	intestine
14	chr4:173915600-173918000	Weak transcription	A549	lung
15	chr4:173915800-173920600	Enhancers	HSMMtube	muscle
16	chr4:173916000-173918000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:173916200-173916600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:173916200-173920600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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