Variant report

Variant	rs62341920
Chromosome Location	chr4:173931535-173931536
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10003998	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017507	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10030847	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17254611	0.80[EUR][1000 genomes]
rs17254681	0.80[EUR][1000 genomes]
rs28582871	0.80[EUR][1000 genomes]
rs4547777	0.80[EUR][1000 genomes]
rs62341884	0.80[EUR][1000 genomes]
rs62341886	0.80[EUR][1000 genomes]
rs62341919	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7682619	0.80[EUR][1000 genomes]
rs9997573	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173904200-173935200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:173920600-173942400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:173923400-173934800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:173925400-173934800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr4:173927400-173933600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:173928600-173934800	Weak transcription	Stomach Mucosa	stomach
7	chr4:173930800-173933400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:173931200-173934200	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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