Variant report
| Variant | rs2610188 |
|---|---|
| Chromosome Location | chr4:173857795-173857796 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10520249 | 1.00[CEU][hapmap] |
| rs10520251 | 0.87[CEU][hapmap] |
| rs12641678 | 0.93[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12644630 | 0.83[ASN][1000 genomes] |
| rs17254079 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17254611 | 0.88[CEU][hapmap];0.83[ASN][1000 genomes] |
| rs17254681 | 0.87[CEU][hapmap] |
| rs17319595 | 0.93[CEU][hapmap] |
| rs2610186 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2610191 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2653831 | 0.87[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs2653844 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28380538 | 0.83[ASN][1000 genomes] |
| rs28524136 | 0.80[ASN][1000 genomes] |
| rs28582871 | 0.83[ASN][1000 genomes] |
| rs28705797 | 0.83[ASN][1000 genomes] |
| rs28800549 | 0.83[ASN][1000 genomes] |
| rs28890012 | 0.80[ASN][1000 genomes] |
| rs4547777 | 0.87[CEU][hapmap];0.83[ASN][1000 genomes] |
| rs56110146 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62341884 | 0.83[ASN][1000 genomes] |
| rs62341886 | 0.83[ASN][1000 genomes] |
| rs62341887 | 0.83[ASN][1000 genomes] |
| rs6553660 | 1.00[CEU][hapmap] |
| rs68168662 | 0.91[ASN][1000 genomes] |
| rs6852770 | 0.93[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7678191 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs7693329 | 0.82[CEU][hapmap] |
| rs9997573 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948856 | chr4:173388217-173967546 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv949126 | chr4:173466221-174051451 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:173853800-173872400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
