Variant report

Variant	rs10520251
Chromosome Location	chr4:173889191-173889192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10003998	0.83[EUR][1000 genomes]
rs10014915	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10520249	0.88[CEU][hapmap]
rs12641678	0.82[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs12644630	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17254079	0.88[CEU][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs17254611	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17254681	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17319595	0.82[CEU][hapmap]
rs2610188	0.87[CEU][hapmap]
rs2610201	0.87[CHD][hapmap]
rs2610204	0.87[CHD][hapmap]
rs2653824	0.81[CHD][hapmap]
rs2653844	0.88[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs28380538	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28483480	0.87[EUR][1000 genomes]
rs28485277	0.86[EUR][1000 genomes]
rs28524136	0.83[AMR][1000 genomes]
rs28582871	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28671519	0.88[EUR][1000 genomes]
rs28705797	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28800549	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4547777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55936404	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56110146	0.81[EUR][1000 genomes]
rs62341884	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62341886	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62341919	0.81[EUR][1000 genomes]
rs6553660	0.84[CEU][hapmap]
rs6852770	0.82[CEU][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs7663630	0.87[EUR][1000 genomes]
rs7678191	0.84[CEU][hapmap]
rs7682619	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7693329	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs9997573	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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