Variant report

Variant	rs17319595
Chromosome Location	chr4:173843450-173843451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10520249	0.94[CEU][hapmap]
rs10520251	0.82[CEU][hapmap]
rs12641678	0.88[CEU][hapmap]
rs17254079	0.94[CEU][hapmap]
rs17254611	0.82[CEU][hapmap]
rs17254681	0.82[CEU][hapmap]
rs17319267	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2332610	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2610186	1.00[ASN][1000 genomes]
rs2610188	0.93[CEU][hapmap]
rs2653831	0.82[CEU][hapmap]
rs2653844	0.94[CEU][hapmap]
rs4547777	0.81[CEU][hapmap]
rs55936404	1.00[ASN][1000 genomes]
rs6553660	0.92[CEU][hapmap]
rs6852770	0.88[CEU][hapmap]
rs72708729	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7678191	0.91[CEU][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv881394	chr4:173757115-173847405	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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