Variant report

Variant	rs2653844
Chromosome Location	chr4:173865128-173865129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10520249	1.00[CEU][hapmap]
rs10520251	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs12641678	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12644630	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17254079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17254611	0.88[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17254681	0.88[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs17319595	0.94[CEU][hapmap]
rs2610186	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2610188	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2610191	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2653831	0.88[CEU][hapmap]
rs28380538	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28582871	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28705797	0.81[ASN][1000 genomes]
rs28800549	0.81[ASN][1000 genomes]
rs4547777	0.88[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56110146	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62341884	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62341886	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62341887	0.81[ASN][1000 genomes]
rs6553660	1.00[CEU][hapmap]
rs68168662	0.89[ASN][1000 genomes]
rs6852770	0.94[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7678191	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7682619	0.81[EUR][1000 genomes]
rs7693329	0.83[CEU][hapmap]
rs9997573	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173853800-173872400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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