Variant report

Variant	rs6848460
Chromosome Location	chr4:55031171-55031172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11932776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35249513	1.00[AMR][1000 genomes]
rs57735051	1.00[AMR][1000 genomes]
rs58366718	1.00[AMR][1000 genomes]
rs60313972	1.00[AMR][1000 genomes]
rs60398195	1.00[AMR][1000 genomes]
rs6838383	1.00[AMR][1000 genomes]
rs6855053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73149594	1.00[AMR][1000 genomes]
rs73151406	1.00[AMR][1000 genomes]
rs73151429	1.00[AMR][1000 genomes]
rs73151433	1.00[AMR][1000 genomes]
rs73151456	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003167	chr4:54732051-55081905	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv537096	chr4:54732051-55081905	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv879020	chr4:54986912-55064573	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv523058	chr4:55018617-55045716	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55018800-55036200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:55029600-55031200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:55029800-55031200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:55030600-55032400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:55030600-55032400	Enhancers	Osteobl	bone
6	chr4:55030600-55033000	Enhancers	HSMM	muscle
7	chr4:55030800-55031200	Enhancers	NH-A	brain
8	chr4:55030800-55031400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:55030800-55031600	Enhancers	Aorta	Aorta
10	chr4:55030800-55031800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:55030800-55032000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:55030800-55032400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:55030800-55032400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:55030800-55032400	Enhancers	HMEC	breast
15	chr4:55030800-55032400	Enhancers	HSMMtube	muscle
16	chr4:55030800-55032400	Enhancers	NHDF-Ad	bronchial
17	chr4:55030800-55032600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:55030800-55032600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:55030800-55032600	Enhancers	NHEK	skin
20	chr4:55030800-55032600	Enhancers	NHLF	lung
21	chr4:55031000-55032200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:55031000-55032400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links