Variant report

Variant	rs57735051
Chromosome Location	chr4:55121919-55121920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11932776	1.00[AMR][1000 genomes]
rs35249513	1.00[AMR][1000 genomes]
rs58366718	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60313972	1.00[AMR][1000 genomes]
rs60398195	1.00[AMR][1000 genomes]
rs6838383	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6848460	1.00[AMR][1000 genomes]
rs6855053	1.00[AMR][1000 genomes]
rs73149594	1.00[AMR][1000 genomes]
rs73151406	1.00[AMR][1000 genomes]
rs73151429	1.00[AMR][1000 genomes]
rs73151433	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151435	0.81[AFR][1000 genomes]
rs73151456	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1011682	chr4:55103816-55128149	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv997422	chr4:55104743-55132489	Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1008497	chr4:55115691-55128149	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55105600-55124800	Weak transcription	Aorta	Aorta
2	chr4:55117200-55129600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:55118000-55129800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:55118600-55122400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:55119000-55127200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:55119000-55138600	Weak transcription	Fetal Intestine Small	intestine
7	chr4:55119200-55122200	Enhancers	NHLF	lung
8	chr4:55119400-55122200	Weak transcription	Right Atrium	heart
9	chr4:55119400-55148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:55120000-55124400	Enhancers	Placenta	Placenta
11	chr4:55120200-55122200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:55120400-55126800	Weak transcription	Fetal Stomach	stomach
13	chr4:55120600-55129600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:55120800-55122200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr4:55120800-55122200	Genic enhancers	Ovary	ovary
16	chr4:55120800-55122400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:55120800-55125800	Weak transcription	Fetal Lung	lung
18	chr4:55121000-55122200	Enhancers	NHDF-Ad	bronchial
19	chr4:55121000-55147600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:55121000-55153200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:55121200-55122400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr4:55121200-55122400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr4:55121200-55125000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:55121200-55125400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:55121200-55130400	Weak transcription	Fetal Kidney	kidney
26	chr4:55121200-55133400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr4:55121200-55147200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr4:55121400-55123200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr4:55121600-55123200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr4:55121600-55125000	Weak transcription	Osteobl	bone
31	chr4:55121600-55128600	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links