Variant report

Variant	rs684878
Chromosome Location	chr13:86323003-86323004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs12865332	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12877570	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1752877	0.81[ASN][1000 genomes]
rs1752892	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1752894	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1764923	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1764924	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2344189	0.81[ASN][1000 genomes]
rs2344190	0.81[ASN][1000 genomes]
rs2987285	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2993080	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34475322	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34683234	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34872500	0.81[ASN][1000 genomes]
rs35286626	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35365943	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4332652	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4470046	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4476067	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5024669	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs583009	0.81[ASN][1000 genomes]
rs584777	0.81[ASN][1000 genomes]
rs586461	0.81[AMR][1000 genomes]
rs588777	0.81[ASN][1000 genomes]
rs588858	0.81[ASN][1000 genomes]
rs590171	0.81[ASN][1000 genomes]
rs593111	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs596310	0.81[ASN][1000 genomes]
rs597478	0.81[ASN][1000 genomes]
rs597514	0.81[ASN][1000 genomes]
rs600520	0.81[ASN][1000 genomes]
rs601494	0.81[ASN][1000 genomes]
rs602824	0.81[ASN][1000 genomes]
rs602889	0.81[ASN][1000 genomes]
rs603661	0.81[ASN][1000 genomes]
rs603713	0.81[ASN][1000 genomes]
rs604220	0.81[ASN][1000 genomes]
rs605341	0.81[ASN][1000 genomes]
rs606646	0.81[ASN][1000 genomes]
rs609288	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs609697	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs610434	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs610894	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs611842	0.81[ASN][1000 genomes]
rs612609	0.81[ASN][1000 genomes]
rs612694	0.81[ASN][1000 genomes]
rs612699	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs614345	0.81[ASN][1000 genomes]
rs617544	0.81[ASN][1000 genomes]
rs617598	0.81[ASN][1000 genomes]
rs618855	0.81[ASN][1000 genomes]
rs618858	0.81[ASN][1000 genomes]
rs61968702	0.83[AFR][1000 genomes]
rs621225	0.81[ASN][1000 genomes]
rs627969	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs628741	0.81[ASN][1000 genomes]
rs629718	0.81[ASN][1000 genomes]
rs630555	0.81[ASN][1000 genomes]
rs631283	0.81[ASN][1000 genomes]
rs631418	0.81[ASN][1000 genomes]
rs631869	0.80[ASN][1000 genomes]
rs632261	0.81[ASN][1000 genomes]
rs632662	0.81[ASN][1000 genomes]
rs633573	0.81[ASN][1000 genomes]
rs633838	0.81[ASN][1000 genomes]
rs635275	0.81[ASN][1000 genomes]
rs636160	0.81[ASN][1000 genomes]
rs637772	0.81[ASN][1000 genomes]
rs637862	0.81[ASN][1000 genomes]
rs640934	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs643592	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs645154	0.81[ASN][1000 genomes]
rs647958	0.81[ASN][1000 genomes]
rs648680	0.81[ASN][1000 genomes]
rs649499	0.81[ASN][1000 genomes]
rs651838	0.81[ASN][1000 genomes]
rs652258	0.81[ASN][1000 genomes]
rs652337	0.81[ASN][1000 genomes]
rs657759	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs659603	0.81[ASN][1000 genomes]
rs660937	0.81[ASN][1000 genomes]
rs664215	0.81[ASN][1000 genomes]
rs664388	0.81[ASN][1000 genomes]
rs666909	0.81[ASN][1000 genomes]
rs669386	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs672623	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs673311	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs673489	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs673497	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs673793	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs673804	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs673886	0.81[ASN][1000 genomes]
rs674815	0.81[ASN][1000 genomes]
rs674843	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs674918	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs675183	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs675263	0.81[ASN][1000 genomes]
rs675350	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs677545	0.81[ASN][1000 genomes]
rs677569	0.81[ASN][1000 genomes]
rs677944	0.81[ASN][1000 genomes]
rs679684	0.81[ASN][1000 genomes]
rs680504	0.81[ASN][1000 genomes]
rs684705	0.81[ASN][1000 genomes]
rs685378	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs686675	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs687539	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs689246	0.81[ASN][1000 genomes]
rs689282	0.81[ASN][1000 genomes]
rs72632607	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7326497	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7981131	0.81[ASN][1000 genomes]
rs7997887	0.81[ASN][1000 genomes]
rs7998374	0.81[ASN][1000 genomes]
rs9319176	0.81[ASN][1000 genomes]
rs9319177	0.81[ASN][1000 genomes]
rs9319178	0.81[ASN][1000 genomes]
rs9566092	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9566093	0.81[ASN][1000 genomes]
rs9566094	0.81[ASN][1000 genomes]
rs9566095	0.81[ASN][1000 genomes]
rs9566096	0.81[ASN][1000 genomes]
rs9575944	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9575945	0.81[ASN][1000 genomes]
rs9575946	0.81[ASN][1000 genomes]
rs9575947	0.81[ASN][1000 genomes]
rs9575948	0.81[ASN][1000 genomes]
rs9575950	0.81[ASN][1000 genomes]
rs9575951	0.81[ASN][1000 genomes]
rs9575952	0.81[ASN][1000 genomes]
rs9575954	0.81[ASN][1000 genomes]
rs9635070	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832668	chr13:86234885-86364254	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1044417	chr13:86239152-86344862	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv976270	chr13:86306573-86332392	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86320600-86334800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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