Variant report

Variant	rs6851144
Chromosome Location	chr4:75979076-75979077
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:75971065..75972930-chr4:75979010..75980545,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10007853	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10012438	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10015360	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10015456	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10018358	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1043633	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1043634	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10518133	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11943279	0.86[ASN][1000 genomes]
rs1346138	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16997586	0.89[ASN][1000 genomes]
rs17000108	0.96[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17000109	0.89[ASN][1000 genomes]
rs17000112	0.96[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17000114	0.91[ASN][1000 genomes]
rs17000141	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17000149	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17000150	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17198085	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17250403	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17250773	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28461358	0.86[ASN][1000 genomes]
rs3733466	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3733467	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775530	0.91[ASN][1000 genomes]
rs3796683	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6824037	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6829853	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6836425	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72660383	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72660386	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72660401	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7654416	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7680016	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7683115	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs890289	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9090	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6851144	DKFZP564O0823	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75956800-75982800	Weak transcription	Pancreas	Pancrea
2	chr4:75971800-75979200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:75974400-75982600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:75974800-75980000	Weak transcription	Aorta	Aorta
5	chr4:75974800-75983800	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:75976200-75979600	Enhancers	Fetal Heart	heart
7	chr4:75977800-75983600	Weak transcription	Right Ventricle	heart
8	chr4:75978000-75981600	Weak transcription	Left Ventricle	heart
9	chr4:75979000-75979600	Enhancers	Rectal Mucosa Donor 31	rectum

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