Variant report

Variant	rs17198085
Chromosome Location	chr4:75976542-75976543
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10007853	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10012438	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10015360	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10015456	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10018358	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1043633	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1043634	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10518133	0.92[AMR][1000 genomes]
rs1346138	0.92[AMR][1000 genomes]
rs17000078	1.00[ASN][1000 genomes]
rs17000108	0.92[AMR][1000 genomes]
rs17000112	0.92[AMR][1000 genomes]
rs17000141	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17000149	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17000150	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17196260	1.00[ASN][1000 genomes]
rs17249558	1.00[ASN][1000 genomes]
rs17250403	0.92[AMR][1000 genomes]
rs17250773	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17386703	1.00[ASN][1000 genomes]
rs28582004	1.00[ASN][1000 genomes]
rs3733466	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3733467	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3796683	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56823709	1.00[ASN][1000 genomes]
rs57922142	1.00[ASN][1000 genomes]
rs6824037	0.85[AMR][1000 genomes]
rs6829853	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6836425	0.92[AMR][1000 genomes]
rs6838268	1.00[ASN][1000 genomes]
rs6851144	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72660383	0.89[AMR][1000 genomes]
rs72660386	0.92[AMR][1000 genomes]
rs72660401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860964	1.00[ASN][1000 genomes]
rs72860981	1.00[ASN][1000 genomes]
rs72863950	1.00[ASN][1000 genomes]
rs7654416	0.89[AMR][1000 genomes]
rs7680016	0.89[AMR][1000 genomes]
rs7683115	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs890289	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9090	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs987055	1.00[ASN][1000 genomes]
rs992064	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17198085	DKFZP564O0823	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75956800-75982800	Weak transcription	Pancreas	Pancrea
2	chr4:75971800-75976600	Weak transcription	Left Ventricle	heart
3	chr4:75971800-75978600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:75971800-75979200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:75972200-75976600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:75974000-75976800	Weak transcription	Right Atrium	heart
7	chr4:75974000-75978400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:75974400-75982600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr4:75974800-75980000	Weak transcription	Aorta	Aorta
10	chr4:75974800-75983800	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:75975000-75978400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr4:75976200-75979600	Enhancers	Fetal Heart	heart

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