Variant report

Variant	rs72863950
Chromosome Location	chr4:76094033-76094034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17000078	1.00[ASN][1000 genomes]
rs17196260	1.00[ASN][1000 genomes]
rs17198085	1.00[ASN][1000 genomes]
rs17249558	1.00[ASN][1000 genomes]
rs17386703	1.00[ASN][1000 genomes]
rs28582004	1.00[ASN][1000 genomes]
rs56823709	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57922142	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59447168	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59847032	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815693	0.86[EUR][1000 genomes]
rs6838268	1.00[ASN][1000 genomes]
rs72660401	1.00[ASN][1000 genomes]
rs72860964	1.00[ASN][1000 genomes]
rs72860981	1.00[ASN][1000 genomes]
rs72865536	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865537	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865540	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865555	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865578	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865580	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865582	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865585	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865587	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865588	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865591	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865593	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865595	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs987055	1.00[ASN][1000 genomes]
rs992064	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1004679	chr4:75997311-76095570	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1010552	chr4:76064415-76325430	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv1850883	chr4:76065572-76194403	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv879492	chr4:76088845-76154064	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76092600-76094200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:76092800-76095000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:76093200-76094200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:76093200-76094200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:76093400-76094400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:76093400-76097800	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:76093600-76094600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:76093600-76095000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:76093800-76095600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:76094000-76094600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:76094000-76094800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr4:76094000-76094800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr4:76094000-76095200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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