Variant report

Variant	rs72860964
Chromosome Location	chr4:75914551-75914552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17000078	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17196260	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17198085	1.00[ASN][1000 genomes]
rs17249558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17386703	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28582004	1.00[ASN][1000 genomes]
rs56823709	1.00[ASN][1000 genomes]
rs6838268	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660401	1.00[ASN][1000 genomes]
rs72860981	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72863950	1.00[ASN][1000 genomes]
rs987055	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs992064	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75876400-75929600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:75889800-75920800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:75902000-75915600	Weak transcription	Pancreas	Pancrea
4	chr4:75902000-75929600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:75908400-75914600	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:75910600-75920800	Weak transcription	Left Ventricle	heart
7	chr4:75912200-75914800	Weak transcription	Psoas Muscle	Psoas
8	chr4:75913200-75917200	Enhancers	Fetal Heart	heart
9	chr4:75913400-75917400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr4:75913600-75915000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:75913600-75915000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:75914000-75915200	Enhancers	Right Atrium	heart
13	chr4:75914000-75917000	Enhancers	Aorta	Aorta
14	chr4:75914200-75915400	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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