Variant report

Variant	rs992064
Chromosome Location	chr4:76101434-76101435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RCHY1-7	chr4:76100209-76101593	ucscGeneNc_uc003hii_2

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17000078	1.00[ASN][1000 genomes]
rs17196260	1.00[ASN][1000 genomes]
rs17198085	1.00[ASN][1000 genomes]
rs17249558	1.00[ASN][1000 genomes]
rs17386703	1.00[ASN][1000 genomes]
rs28582004	1.00[ASN][1000 genomes]
rs2867280	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs56823709	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57922142	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59447168	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59847032	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6815693	0.86[EUR][1000 genomes]
rs6838268	1.00[ASN][1000 genomes]
rs72660401	1.00[ASN][1000 genomes]
rs72860964	1.00[ASN][1000 genomes]
rs72860981	1.00[ASN][1000 genomes]
rs72863950	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865536	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865537	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865540	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865555	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865578	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865580	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865582	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865585	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865587	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865588	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865591	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865593	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865595	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs987055	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1010552	chr4:76064415-76325430	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv1850883	chr4:76065572-76194403	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879492	chr4:76088845-76154064	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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