Variant report

Variant	rs6852763
Chromosome Location	chr4:124426879-124426880
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:124426846..124429708-chr4:124483364..124486101,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12503335	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1452732	0.81[ASN][1000 genomes]
rs2553378	0.97[AMR][1000 genomes]
rs2893051	0.97[AMR][1000 genomes]
rs4833280	0.81[ASN][1000 genomes]
rs4833925	0.91[ASN][1000 genomes]
rs6534414	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6813552	0.97[AMR][1000 genomes]
rs6832678	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6838729	0.97[AMR][1000 genomes]
rs766162	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7664219	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7681029	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006945	chr4:124206328-124503863	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv537240	chr4:124206328-124503863	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv34581	chr4:124271321-125247395	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:124425600-124427200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:124426000-124427000	Active TSS	HepG2	liver
3	chr4:124426000-124427200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:124426000-124427600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:124426000-124427600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:124426000-124427600	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr4:124426200-124427000	Active TSS	Primary hematopoietic stem cells	blood
8	chr4:124426200-124427000	Active TSS	Fetal Intestine Small	intestine
9	chr4:124426200-124427000	Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr4:124426200-124427000	Active TSS	K562	blood
11	chr4:124426200-124427200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:124426200-124427200	Active TSS	Muscle Satellite Cultured Cells	--
13	chr4:124426200-124427200	Active TSS	Brain Cingulate Gyrus	brain
14	chr4:124426200-124427200	Active TSS	Fetal Lung	lung
15	chr4:124426200-124427200	Active TSS	Fetal Muscle Leg	muscle
16	chr4:124426200-124427200	Active TSS	A549	lung
17	chr4:124426200-124427200	Active TSS	NH-A	brain
18	chr4:124426200-124427400	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr4:124426200-124427400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:124426200-124427400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:124426200-124427400	Active TSS	Colonic Mucosa	Colon
22	chr4:124426200-124427400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr4:124426200-124427400	Active TSS	Fetal Intestine Large	intestine
24	chr4:124426200-124427400	Active TSS	Fetal Stomach	stomach
25	chr4:124426200-124427400	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr4:124426200-124427400	Active TSS	Thymus	Thymus
27	chr4:124426200-124427400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
28	chr4:124426200-124427400	Active TSS	NHLF	lung
29	chr4:124426200-124427600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr4:124426200-124427600	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr4:124426200-124427600	Active TSS	Ovary	ovary
32	chr4:124426200-124427600	Active TSS	Rectal Smooth Muscle	rectum
33	chr4:124426200-124427600	Active TSS	Stomach Smooth Muscle	stomach
34	chr4:124426200-124427600	Flanking Active TSS	HUVEC	blood vessel
35	chr4:124426200-124427600	Active TSS	Osteobl	bone
36	chr4:124426200-124427800	Active TSS	Colon Smooth Muscle	Colon
37	chr4:124426200-124427800	Active TSS	Right Atrium	heart
38	chr4:124426200-124428000	Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr4:124426200-124428000	Active TSS	Brain Anterior Caudate	brain
40	chr4:124426400-124427000	Bivalent/Poised TSS	Primary T helper cells fromperipheralblood	blood
41	chr4:124426400-124427000	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr4:124426400-124427200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr4:124426400-124427200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr4:124426400-124427200	Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr4:124426400-124427200	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
46	chr4:124426400-124427200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr4:124426400-124427200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:124426400-124427200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr4:124426400-124427200	Active TSS	Brain Germinal Matrix	brain
50	chr4:124426400-124427200	Active TSS	Fetal Brain Male	brain

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