Variant report

Variant rs685393
Chromosome Location chr1:78579361-78579362
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:36 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:78546600-78579800 Weak transcription Liver Liver
2 chr1:78554800-78579800 Weak transcription Duodenum Mucosa Duodenum
3 chr1:78555400-78608600 Weak transcription Pancreas Pancrea
4 chr1:78558600-78582800 Weak transcription Fetal Intestine Large intestine
5 chr1:78567000-78586800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr1:78567600-78607200 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr1:78569400-78579600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr1:78569800-78592600 Weak transcription Spleen Spleen
9 chr1:78570200-78579800 Weak transcription Psoas Muscle Psoas
10 chr1:78570400-78579800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:78570800-78589200 Weak transcription Right Ventricle heart
12 chr1:78571400-78579600 Weak transcription Muscle Satellite Cultured Cells --
13 chr1:78575000-78579600 Weak transcription HSMM muscle
14 chr1:78577600-78584400 Weak transcription Right Atrium heart
15 chr1:78577800-78580000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
16 chr1:78577800-78580200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr1:78578200-78579400 Weak transcription Fetal Heart heart
18 chr1:78578200-78579600 Enhancers Skeletal Muscle Female skeletal muscle
19 chr1:78578200-78579600 Enhancers NHEK skin
20 chr1:78578200-78579600 Weak transcription NHLF lung
21 chr1:78578200-78594200 Weak transcription Left Ventricle heart
22 chr1:78578400-78579600 Weak transcription GM12878-XiMat blood
23 chr1:78578400-78579600 Weak transcription NHDF-Ad bronchial
24 chr1:78578400-78579800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr1:78578400-78579800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr1:78578400-78580000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
27 chr1:78578600-78580200 Enhancers HMEC breast
28 chr1:78578800-78579600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr1:78578800-78580200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr1:78578800-78580200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:78578800-78580200 Enhancers HepG2 liver
32 chr1:78579000-78579600 Enhancers Skeletal Muscle Male skeletal muscle
33 chr1:78579000-78579800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:78579200-78580000 Enhancers Esophagus oesophagus
35 chr1:78579200-78580200 Enhancers Aorta Aorta
36 chr1:78579200-78580200 Strong transcription Fetal Intestine Small intestine

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