Variant report

Variant	rs6854628
Chromosome Location	chr4:86646327-86646328
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59550244	1.00[AFR][1000 genomes]
rs60874860	0.91[AFR][1000 genomes]
rs6823010	1.00[AFR][1000 genomes]
rs7697448	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86632000-86647000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:86638000-86646600	Weak transcription	Small Intestine	intestine
3	chr4:86638200-86646600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:86639400-86646800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:86641600-86646800	Weak transcription	Ovary	ovary
6	chr4:86642000-86646400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:86642000-86646600	Weak transcription	Osteobl	bone
8	chr4:86642200-86646600	Weak transcription	Fetal Heart	heart
9	chr4:86642400-86646800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:86642600-86646800	Weak transcription	Placenta	Placenta
11	chr4:86643200-86646600	Weak transcription	Pancreas	Pancrea
12	chr4:86644000-86650200	Enhancers	NHDF-Ad	bronchial
13	chr4:86644800-86646400	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:86644800-86646600	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr4:86644800-86647800	Enhancers	Brain Cingulate Gyrus	brain
16	chr4:86645000-86646600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr4:86645000-86647800	Enhancers	Brain Anterior Caudate	brain
18	chr4:86645000-86648200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr4:86645000-86650200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:86645200-86646400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:86645200-86646400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:86645400-86646400	Weak transcription	Fetal Muscle Leg	muscle
23	chr4:86645400-86646400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr4:86645400-86646400	Weak transcription	HSMMtube	muscle
25	chr4:86645800-86647600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:86645800-86648000	Enhancers	Liver	Liver
27	chr4:86646000-86646800	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr4:86646000-86646800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:86646000-86646800	Enhancers	K562	blood
30	chr4:86646000-86647000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:86646000-86647400	Enhancers	A549	lung
32	chr4:86646000-86647800	Enhancers	HSMM	muscle
33	chr4:86646000-86647800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr4:86646000-86648000	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr4:86646000-86649000	Enhancers	Primary B cells from peripheral blood	blood
36	chr4:86646200-86646400	Flanking Active TSS	Primary B cells from cord blood	blood
37	chr4:86646200-86646400	Enhancers	GM12878-XiMat	blood
38	chr4:86646200-86647000	Enhancers	Brain Substantia Nigra	brain
39	chr4:86646200-86647400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:86646200-86647600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:86646200-86647600	Enhancers	Fetal Lung	lung
42	chr4:86646200-86647800	Enhancers	Brain Hippocampus Middle	brain
43	chr4:86646200-86648200	Enhancers	Adipose Nuclei	Adipose

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