Variant report

Variant	rs6856677
Chromosome Location	chr4:56001834-56001835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11722486	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs12331869	0.82[AFR][1000 genomes]
rs1380059	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35389572	0.90[AFR][1000 genomes]
rs61444922	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6817988	0.86[EUR][1000 genomes]
rs73147083	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73147095	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55997800-56003000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:55999600-56002000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:55999600-56020600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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