Variant report

Variant	rs73147083
Chromosome Location	chr4:55989661-55989662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KDR-3	chr4:55988831-55992348	ucscGeneNc_uc003hay_2

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1380059	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61444922	1.00[EUR][1000 genomes]
rs6817988	1.00[EUR][1000 genomes]
rs6856677	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73147095	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55943200-55990000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:55954400-55990400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:55961000-55990000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:55971000-55990000	Weak transcription	Gastric	stomach
5	chr4:55972000-55990800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:55972200-55990000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:55981000-55990000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:55981800-55990000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:55983200-55990000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:55985000-55990600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:55986800-55991000	Flanking Active TSS	HUVEC	blood vessel
12	chr4:55986800-55991400	Active TSS	Right Atrium	heart
13	chr4:55987200-55990000	Active TSS	Adipose Nuclei	Adipose
14	chr4:55987400-55990600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
15	chr4:55987800-55990000	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr4:55988000-55990200	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr4:55988000-55992400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:55988000-55992400	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr4:55988600-55989800	Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr4:55988600-55989800	Active TSS	Fetal Kidney	kidney
21	chr4:55988600-55990000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr4:55988600-55990400	Active TSS	Liver	Liver
23	chr4:55988600-55990400	Active TSS	Left Ventricle	heart
24	chr4:55988600-55990600	Active TSS	Fetal Stomach	stomach
25	chr4:55988600-55990800	Active TSS	Psoas Muscle	Psoas
26	chr4:55988600-55992600	Active TSS	H9 Cell Line	embryonic stem cell
27	chr4:55988800-55990600	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr4:55988800-55990800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:55989000-55990400	Active TSS	H1 Cell Line	embryonic stem cell
30	chr4:55989000-55990800	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
31	chr4:55989000-55991000	Active TSS	Right Ventricle	heart
32	chr4:55989200-55990000	Weak transcription	Lung	lung
33	chr4:55989200-55990200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
34	chr4:55989400-55990000	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr4:55989400-55992400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

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