Variant report

Variant	rs6856752
Chromosome Location	chr4:56420701-56420702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:56410117..56410682-chr4:56420256..56420884,2	K562	blood:
2	chr4:56410648..56414304-chr4:56416638..56420885,5	MCF-7	breast:
3	chr4:56310819..56311699-chr4:56420351..56421225,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134852	Chromatin interaction
ENSG00000272969	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs57778451	0.92[AFR][1000 genomes]
rs6813118	0.92[AFR][1000 genomes]
rs73151816	0.92[AFR][1000 genomes]
rs73151818	0.92[AFR][1000 genomes]
rs73151843	0.88[AFR][1000 genomes]
rs73151844	0.92[AFR][1000 genomes]
rs73151851	0.92[AFR][1000 genomes]
rs73151872	0.88[AFR][1000 genomes]
rs73153615	0.88[AFR][1000 genomes]
rs73153686	0.83[AFR][1000 genomes]
rs73155692	1.00[AFR][1000 genomes]
rs73155698	0.83[AFR][1000 genomes]
rs7655037	0.96[AFR][1000 genomes]
rs7682802	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56416800-56425600	Weak transcription	K562	blood
2	chr4:56418800-56431800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:56419200-56420800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:56419400-56420800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:56419400-56420800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:56419800-56420800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:56419800-56420800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:56420000-56420800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:56420000-56420800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:56420000-56420800	Enhancers	Fetal Brain Female	brain
11	chr4:56420000-56420800	Enhancers	Fetal Stomach	stomach
12	chr4:56420000-56420800	Enhancers	HSMM	muscle
13	chr4:56420000-56420800	Enhancers	NHEK	skin
14	chr4:56420200-56420800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr4:56420200-56420800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:56420200-56420800	Enhancers	Adipose Nuclei	Adipose
17	chr4:56420200-56420800	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr4:56420400-56420800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:56420400-56420800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr4:56420400-56420800	Enhancers	Primary T cells fromperipheralblood	blood
21	chr4:56420400-56420800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr4:56420400-56420800	Enhancers	Duodenum Mucosa	Duodenum
23	chr4:56420400-56420800	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr4:56420400-56420800	Enhancers	NHDF-Ad	bronchial
25	chr4:56420600-56420800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:56420600-56420800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:56420600-56420800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:56420600-56420800	Enhancers	Fetal Intestine Large	intestine
29	chr4:56420600-56420800	Flanking Active TSS	Osteobl	bone

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