Variant report

Variant	rs7682802
Chromosome Location	chr4:56417464-56417465
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:56415018..56417689-chr4:56438366..56440978,2	MCF-7	breast:
2	chr4:56417353..56420509-chr4:56422017..56425975,3	K562	blood:
3	chr4:56410648..56414304-chr4:56416638..56420885,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272969	Chromatin interaction
ENSG00000134852	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6856752	0.83[AFR][1000 genomes]
rs73153686	1.00[AFR][1000 genomes]
rs73155692	0.83[AFR][1000 genomes]
rs73155698	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56414000-56419200	Weak transcription	Adipose Nuclei	Adipose
2	chr4:56414000-56419200	Weak transcription	Right Atrium	heart
3	chr4:56414000-56419400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:56414200-56417600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:56414200-56417600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:56414200-56420400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:56414400-56417600	Enhancers	NHEK	skin
8	chr4:56414400-56418800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:56414400-56419000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:56414400-56419200	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:56414400-56419200	Weak transcription	GM12878-XiMat	blood
12	chr4:56414600-56418200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:56414600-56419200	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:56414600-56419800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:56414800-56419000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:56414800-56419600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr4:56414800-56419600	Weak transcription	Fetal Lung	lung
18	chr4:56414800-56419800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr4:56414800-56419800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr4:56414800-56420000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:56414800-56420000	Weak transcription	Fetal Brain Female	brain
22	chr4:56415000-56419400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr4:56415000-56419600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr4:56415000-56419600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:56415000-56419800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:56415000-56419800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:56415000-56419800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr4:56415200-56419000	Weak transcription	HepG2	liver
29	chr4:56416400-56417600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr4:56416400-56419000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr4:56416400-56419200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:56416400-56419400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr4:56416400-56420600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:56416600-56419000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:56416600-56419200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:56416600-56419200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr4:56416600-56419200	Weak transcription	NHLF	lung
38	chr4:56416800-56419000	Weak transcription	Osteobl	bone
39	chr4:56416800-56419400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:56416800-56419400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr4:56416800-56419400	Weak transcription	HSMM	muscle
42	chr4:56416800-56419400	Weak transcription	NHDF-Ad	bronchial
43	chr4:56416800-56420600	Weak transcription	Fetal Intestine Large	intestine
44	chr4:56416800-56425600	Weak transcription	K562	blood
45	chr4:56417000-56419600	Weak transcription	NH-A	brain

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