Variant report

Variant	rs6857756
Chromosome Location	chr4:147165756-147165757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:147165326..147167236-chr4:147257804..147260774,3	MCF-7	breast:
2	chr4:147164316..147165957-chr4:147168018..147169690,2	K562	blood:
3	chr4:147165553..147167400-chr4:147173717..147175594,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10010528	0.83[GIH][hapmap]
rs10032088	0.88[GIH][hapmap]
rs13435691	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28361448	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7675498	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147162200-147167400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr4:147162200-147167600	Enhancers	Fetal Lung	lung
3	chr4:147162200-147167600	Enhancers	Fetal Muscle Leg	muscle
4	chr4:147162600-147167000	Enhancers	Placenta	Placenta
5	chr4:147163200-147166400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:147163200-147178000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr4:147163400-147166200	Enhancers	Right Ventricle	heart
8	chr4:147163600-147165800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:147163600-147166200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:147163600-147167200	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr4:147163600-147167200	Enhancers	Stomach Mucosa	stomach
12	chr4:147163800-147166200	Weak transcription	Aorta	Aorta
13	chr4:147163800-147166600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:147163800-147166600	Weak transcription	A549	lung
15	chr4:147163800-147166800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr4:147163800-147176000	Weak transcription	HSMM	muscle
17	chr4:147164000-147167400	Enhancers	Stomach Smooth Muscle	stomach
18	chr4:147164000-147168400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:147164200-147166600	Enhancers	Fetal Thymus	thymus
20	chr4:147164200-147166800	Enhancers	Esophagus	oesophagus
21	chr4:147164400-147166000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:147164400-147166000	Weak transcription	NHLF	lung
23	chr4:147164400-147166400	Weak transcription	Fetal Intestine Large	intestine
24	chr4:147164400-147166600	Enhancers	Lung	lung
25	chr4:147164400-147166800	Enhancers	Spleen	Spleen
26	chr4:147164600-147166000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr4:147164600-147166000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:147164600-147166400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:147164600-147166600	Weak transcription	Osteobl	bone
30	chr4:147164600-147166800	Weak transcription	NH-A	brain
31	chr4:147164600-147168400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr4:147164800-147165800	Weak transcription	Ovary	ovary
33	chr4:147164800-147166200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:147164800-147166200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr4:147164800-147166400	Weak transcription	Pancreas	Pancrea
36	chr4:147164800-147166800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr4:147164800-147167000	Enhancers	Right Atrium	heart
38	chr4:147164800-147167800	Enhancers	Adipose Nuclei	Adipose
39	chr4:147164800-147169400	Weak transcription	HUVEC	blood vessel
40	chr4:147164800-147177200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr4:147164800-147207200	Weak transcription	Thymus	Thymus
42	chr4:147165000-147165800	Weak transcription	Left Ventricle	heart
43	chr4:147165000-147166000	Enhancers	Colonic Mucosa	Colon
44	chr4:147165000-147166400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr4:147165000-147166800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
46	chr4:147165000-147207200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr4:147165200-147166400	Weak transcription	Gastric	stomach
48	chr4:147165200-147174000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr4:147165200-147176200	Weak transcription	Primary B cells from cord blood	blood
50	chr4:147165200-147207200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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