Variant report

Variant	rs7675498
Chromosome Location	chr4:147156982-147156983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13435691	0.83[EUR][1000 genomes]
rs28361448	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6857756	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461675	chr4:147116864-147768206	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv595651	chr4:147116864-147768206	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147156200-147157000	Enhancers	NHLF	lung
2	chr4:147156200-147157800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:147156200-147157800	Enhancers	Left Ventricle	heart
4	chr4:147156200-147160600	Enhancers	Adipose Nuclei	Adipose
5	chr4:147156400-147157400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr4:147156400-147157600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr4:147156400-147158000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:147156400-147158000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:147156600-147157600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr4:147156800-147157600	Enhancers	Fetal Stomach	stomach
11	chr4:147156800-147158000	Enhancers	Lung	lung
12	chr4:147156800-147158200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr4:147156800-147158200	Enhancers	Spleen	Spleen
14	chr4:147156800-147158600	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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