Variant report

Variant	rs6859372
Chromosome Location	chr5:106295753-106295754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56950276	1.00[AMR][1000 genomes]
rs57340269	1.00[AMR][1000 genomes]
rs59234027	1.00[AMR][1000 genomes]
rs60660431	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6860613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6860967	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6866200	0.83[AMR][1000 genomes]
rs6890901	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73204121	0.83[AMR][1000 genomes]
rs73204173	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73204174	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73204175	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73204179	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73204180	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73204183	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73204187	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73204200	1.00[AMR][1000 genomes]
rs7721550	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7726697	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7736886	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016354	chr5:105752391-106392762	ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1017901	chr5:105847628-106298378	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv830439	chr5:106192038-106383828	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv882679	chr5:106263197-106399718	Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106288400-106302000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:106292400-106302000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:106294800-106295800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr5:106295000-106295800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:106295000-106295800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:106295000-106295800	Enhancers	Stomach Mucosa	stomach
7	chr5:106295000-106295800	Enhancers	Hela-S3	cervix
8	chr5:106295000-106296600	Enhancers	HUVEC	blood vessel
9	chr5:106295200-106295800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:106295200-106295800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:106295600-106298400	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links