Variant report

Variant	rs7736886
Chromosome Location	chr5:106270827-106270828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56950276	0.83[AMR][1000 genomes]
rs57340269	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59234027	0.83[AMR][1000 genomes]
rs60660431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6859372	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6860613	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6860967	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6890901	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73204173	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73204174	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73204175	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73204179	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73204180	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73204183	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73204187	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73204200	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7721550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7726697	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599285	chr5:105355890-106271223	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016354	chr5:105752391-106392762	ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1017901	chr5:105847628-106298378	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	esv2752055	chr5:106034797-106280515	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1020718	chr5:106058868-106293873	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv462378	chr5:106162197-106293263	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv599301	chr5:106162197-106293263	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv830439	chr5:106192038-106383828	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv599304	chr5:106223536-106271223	Enhancers Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv882679	chr5:106263197-106399718	Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106269800-106271000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:106270800-106271000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:106270800-106271200	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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