Variant report

Variant	rs6861554
Chromosome Location	chr5:124312077-124312078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1112727	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12515229	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12515871	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1961388	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2166410	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2166411	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2408227	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2408229	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2408231	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34105150	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35689682	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35879477	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs36088659	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4441872	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4835849	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4835850	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62372816	0.82[AMR][1000 genomes]
rs62372824	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6868443	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6868598	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6875807	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6876737	0.82[AMR][1000 genomes]
rs6890814	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73782560	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7444060	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7701094	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv599657	chr5:124284253-124330522	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124308600-124314400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:124310000-124313000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:124310000-124314600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:124310400-124315000	Weak transcription	Primary B cells from cord blood	blood
5	chr5:124311000-124313000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:124311200-124316400	Weak transcription	Pancreas	Pancrea
7	chr5:124311400-124314400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:124311600-124312600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:124311600-124313200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr5:124311800-124312400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:124311800-124312400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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