Variant report

Variant	rs6876737
Chromosome Location	chr5:124295770-124295771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:124294502..124296880-chr5:124299033..124300860,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1112727	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12514161	0.85[ASN][1000 genomes]
rs12515871	0.84[AMR][1000 genomes]
rs12517390	0.88[ASN][1000 genomes]
rs12520547	0.86[ASN][1000 genomes]
rs1961388	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2028855	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2166410	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2166411	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2408225	0.85[ASN][1000 genomes]
rs2408227	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2408229	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2408231	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34105150	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35649581	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35689682	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35879477	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36088659	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4835849	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4835850	0.80[AMR][1000 genomes]
rs4836129	0.88[ASN][1000 genomes]
rs4836130	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62372816	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62372824	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6861554	0.82[AMR][1000 genomes]
rs6868443	0.81[AMR][1000 genomes]
rs6868598	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6875807	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6890814	0.81[AMR][1000 genomes]
rs7444060	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv599657	chr5:124284253-124330522	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124284200-124301800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:124287600-124297800	Weak transcription	Adipose Nuclei	Adipose
3	chr5:124288800-124298800	Weak transcription	Primary B cells from cord blood	blood
4	chr5:124292600-124297800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:124292600-124297800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:124292600-124298000	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:124293000-124295800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:124293000-124298200	Weak transcription	Brain Substantia Nigra	brain
9	chr5:124293400-124296000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:124293600-124297400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:124295400-124296200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:124295400-124296200	Enhancers	HMEC	breast
13	chr5:124295600-124299000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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