Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10041789	0.82[ASN][1000 genomes]
rs10065037	0.81[ASN][1000 genomes]
rs10077640	0.81[ASN][1000 genomes]
rs1026009	0.81[EUR][1000 genomes]
rs12517390	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12520547	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13362134	0.82[ASN][1000 genomes]
rs2028855	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2408225	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35649581	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4836129	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4836130	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62372816	0.86[ASN][1000 genomes]
rs6876107	0.83[ASN][1000 genomes]
rs6876737	0.85[ASN][1000 genomes]
rs6880908	0.80[ASN][1000 genomes]
rs6881675	0.81[ASN][1000 genomes]
rs6886725	0.85[ASN][1000 genomes]
rs7721141	0.81[ASN][1000 genomes]
rs960833	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124259200-124270800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:124259600-124270400	Weak transcription	Primary B cells from cord blood	blood
3	chr5:124263200-124264600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:124263200-124264600	Enhancers	HMEC	breast
5	chr5:124263600-124264800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:124263800-124265000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:124264000-124271400	Weak transcription	HSMM	muscle
8	chr5:124264200-124268400	Weak transcription	NHEK	skin
9	chr5:124264400-124266600	Weak transcription	Aorta	Aorta

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