Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10041789	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10051781	0.98[ASN][1000 genomes]
rs10058773	0.85[EUR][1000 genomes]
rs10065037	0.99[ASN][1000 genomes]
rs10077640	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10078386	0.82[JPT][hapmap]
rs1078675	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11241774	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs12514161	0.82[ASN][1000 genomes]
rs13362134	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2408225	0.82[ASN][1000 genomes]
rs4367296	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4434376	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4527598	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6595557	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6876107	0.84[ASN][1000 genomes]
rs6880908	0.99[ASN][1000 genomes]
rs6881675	0.99[ASN][1000 genomes]
rs6886725	0.86[ASN][1000 genomes]
rs6895765	0.82[JPT][hapmap]
rs6898265	0.82[JPT][hapmap]
rs753671	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7718357	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7721141	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs960833	C9orf70	trans	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124242800-124248600	Enhancers	Brain Substantia Nigra	brain
2	chr5:124243000-124248600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:124243000-124248600	Weak transcription	Primary B cells from cord blood	blood
4	chr5:124244800-124248800	Weak transcription	Left Ventricle	heart
5	chr5:124245400-124249000	Enhancers	GM12878-XiMat	blood
6	chr5:124245800-124248400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr5:124245800-124248400	Weak transcription	Dnd41	blood
8	chr5:124245800-124248600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:124246000-124254200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:124246600-124248800	Weak transcription	Ovary	ovary
11	chr5:124246800-124248200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:124246800-124248200	Weak transcription	Psoas Muscle	Psoas
13	chr5:124247000-124249600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr5:124247200-124249400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr5:124247400-124248600	Weak transcription	Brain Hippocampus Middle	brain
16	chr5:124247600-124248400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:124248000-124249000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr5:124248000-124249200	Enhancers	Primary B cells from peripheral blood	blood

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